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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_3235Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B. (324 aa)    
Predicted Functional Partners:
CAP_0388
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
     
 0.883
CAP_6848
Pirin protein; Belongs to the pirin family.
 
  
 0.700
CAP_0770
Pirin-related protein; Belongs to the pirin family.
 
  
 0.687
CAP_2094
Iron-sulfur cluster-binding protein, Rieske family.
 
  
 0.616
CAP_0280
Pirin; Belongs to the pirin family.
 
  
 0.613
CAP_3234
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.571
CAP_4471
Putative cyclase.
    
  0.529
CAP_7824
Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase.
    
 0.523
CAP_5953
Hypothetical protein.
  
 
 0.515
gcvT
Aminomethyltransferase (glycine cleavage system T protein); The glycine cleavage system catalyzes the degradation of glycine.
    
 0.494
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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