Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAP_3315VgrG protein. (298 aa)    
Predicted Functional Partners:
CAP_3316
VgrG protein.
     0.977
CAP_5566
Hypothetical protein.
 
  
 0.806
CAP_5253
VgrG protein.
  
  
  0.805
CAP_5556
Hypothetical protein.
 
 
 0.792
CAP_6448
Protein ImpG/VasA.
 
  
 0.791
CAP_6449
Hypothetical protein.
 
 
 0.791
CAP_5557
Protein ImpG/VasA.
 
  
 0.790
CAP_5573
Hypothetical protein.
 
  
 0.790
CAP_8514
IcmF-related protein.
 
  
 0.786
CAP_5568
IcmF-related protein.
 
  
 0.785
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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