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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_3729Fatty acid desaturase. (335 aa)    
Predicted Functional Partners:
CAP_5737
Fatty acid desaturase.
  
  
 
0.933
CAP_0388
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
     
 0.792
CAP_3204
Malonyl CoA-acyl carrier protein transacylase.
  
 0.789
CAP_2651
Putative LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE).
   
 0.768
CAP_3851
ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp.
   
  
 0.639
CAP_3200
Malonyl CoA-acyl carrier protein transacylase.
  
 0.569
CAP_1339
Malonyl CoA-acyl carrier protein transacylase.
  
 0.557
CAP_4376
Long-chain-fatty-acid--CoA ligase.
   
 0.550
CAP_3198
Malonyl CoA-acyl carrier protein transacylase.
  
 0.548
CAP_3006
Ribonucleotide reductase of class Ia (aerobic), beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
  
  
  0.545
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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