Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAP_3798Hypothetical protein. (325 aa)    
Predicted Functional Partners:
CAP_6601
Glutamate synthase [NADPH] large chain.
    
 0.884
CAP_3797
Hypothetical protein.
       0.760
CAP_8139
NADP-dependent malic enzyme.
   
 
 0.632
CAP_5693
Two-component hybrid sensor and regulator.
    
 0.625
CAP_4888
3-isopropylmalate dehydratase large subunit.
     
  0.606
CAP_3799
Transposase, IS493 family.
 
    0.595
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.591
CAP_2638
Transcriptional regulator, AraC family.
  
     0.545
CAP_3063
Hypothetical protein.
  
  0.487
CAP_3796
Hypothetical protein.
       0.482
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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