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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_3869Nucleoside-diphosphate-sugar epimerase. (300 aa)    
Predicted Functional Partners:
CAP_5153
Long-chain-fatty-acid--CoA ligase.
  
 0.950
CAP_6601
Glutamate synthase [NADPH] large chain.
    
  0.861
CAP_3870
Transcriptional regulator, XRE family.
 
  
  0.856
CAP_1339
Malonyl CoA-acyl carrier protein transacylase.
  
 0.811
CAP_3199
Malonyl CoA-acyl carrier protein transacylase.
  
 0.797
CAP_3204
Malonyl CoA-acyl carrier protein transacylase.
  
 0.792
CAP_3198
Malonyl CoA-acyl carrier protein transacylase.
  
 0.766
rpsS
SSU ribosomal protein S19p (S15e); Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.761
CAP_4378
Malonyl CoA-acyl carrier protein transacylase.
  
 0.748
rpsL
SSU ribosomal protein S12p (S23e); Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.740
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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