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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_3961Coenzyme F390 synthetase. (504 aa)    
Predicted Functional Partners:
CAP_4358
Aspartyl-tRNA(Asn) amidotransferase subunit A; Belongs to the amidase family.
    
  0.911
CAP_0388
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.788
CAP_3962
Ribosome-associated endonuclease; Involved in final steps of 23S rRNA maturation.
       0.786
CAP_3465
Hypothetical protein.
    
  0.744
CAP_5722
Non-specific protein-tyrosine kinase.
    
  0.744
CAP_6017
Indoleacetamide hydrolase; Belongs to the amidase family.
    
  0.727
gatA
Aspartyl-tRNA(Asn) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
  0.722
CAP_1171
Molybdopterin oxidoreductase, iron-sulfur binding protein subunit.
     
 0.718
CAP_2024
Molybdopterin oxidoreductase, iron-sulfur binding protein subunit.
     
 0.718
CAP_1141
Hypothetical protein.
  
     0.565
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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