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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_4338Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (316 aa)    
Predicted Functional Partners:
CAP_6551
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.697
CAP_4337
Putative chitinase; Belongs to the glycosyl hydrolase 18 family.
       0.636
CAP_4016
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.633
CAP_0127
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.614
CAP_3540
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.610
CAP_5732
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.543
CAP_4339
Multidrug resistance transporter, Bcr/CflA family.
       0.529
CAP_5757
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.524
CAP_4336
Hypothetical protein.
       0.492
CAP_3208
Hydrogen peroxide-inducible activator; Belongs to the LysR transcriptional regulatory family.
  
     0.462
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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