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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_4515Agmatine deiminase; Belongs to the agmatine deiminase family. (468 aa)    
Predicted Functional Partners:
CAP_8584
N-carbamoylputrescine amidase.
 
 0.983
CAP_0860
Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
  
 0.889
CAP_6501
Hydrolase.
 
 
 0.856
CAP_3400
Omega amidase.
 
 
 0.624
CAP_3450
Agmatinase; Belongs to the arginase family.
     
 0.619
CAP_3076
Hypothetical protein.
   
    0.597
CAP_0977
Quinolinate phosphoribosyltransferase; Belongs to the NadC/ModD family.
   
    0.554
CAP_8753
Arginase; Belongs to the arginase family.
     
 0.515
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.509
CAP_4516
Acyltransferase family protein.
       0.491
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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