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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_4856L-Proline/Glycine betaine transporter ProP. (443 aa)    
Predicted Functional Partners:
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
    0.776
CAP_2887
Riboflavin synthase eubacterial/eukaryotic.
   
    0.688
CAP_4855
Putative cytochrome P450 hydroxylase.
       0.613
dctA
Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
  
 0.541
CAP_0730
4-hydroxybenzoate transporter.
  
   
 0.530
CAP_5153
Long-chain-fatty-acid--CoA ligase.
  
 
 0.509
CAP_7846
Chorismate mutase I.
  
 
 0.501
CAP_4857
Acyl-CoA dehydrogenase.
       0.497
CAP_8501
Low-affinity inorganic phosphate transporter.
  
   
 0.486
CAP_2727
Hypothetical protein.
  
     0.477
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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