Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CAP_4942High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (294 aa)    
Predicted Functional Partners:
CAP_7244
Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
CAP_4941
Branched-chain amino acid ABC transporter, amino acid-binding protein.
 
 
 0.997
CAP_7245
Branched-chain amino acid transport ATP-binding protein LivG.
 
 
 0.997
CAP_7246
Branched-chain amino acid transport ATP-binding protein LivF.
 
 
 0.992
CAP_5446
Hypothetical protein.
 
 
 0.971
CAP_3350
Hypothetical protein.
 
 
 0.953
CAP_0845
Hypothetical protein.
  
 
 0.830
CAP_4943
Hypothetical protein.
       0.691
ureB
Urease beta subunit; Belongs to the urease beta subunit family.
  
  
 0.516
CAP_8741
Allophanate hydrolase 2 subunit 1.
     
 0.489
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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