STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recADNA recombination/repair protein RecA; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
lexA
LexA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.991
AMB94327.1
ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.947
recX
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.946
AMB93447.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.936
recQ
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.936
AMB94711.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.922
topA
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.879
dnaN
DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.873
AMB93474.1
Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.825
Your Current Organism:
Aerococcus sanguinicola
NCBI taxonomy Id: 119206
Other names: A. sanguinicola, Aerococcus sanguicola, Aerococcus sanguinicola corrig. Lawson et al. 2001 emend. Tohno et al. 2014, Aerococcus sp. CCUG 43001, CCUG 43001, CIP 106533, DSM 15633, JCM 11549
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.