STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
typAGTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)    
Predicted Functional Partners:
guaA
GMP synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.771
rpsI
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.629
AMB93626.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.609
rpmI
50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.597
AMB94118.1
50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.580
AMB94713.1
Elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.561
infC
Translation initiation factor IF-3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.559
AMB93627.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
tig
Trigger factor; Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.533
polA
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.524
Your Current Organism:
Aerococcus sanguinicola
NCBI taxonomy Id: 119206
Other names: A. sanguinicola, Aerococcus sanguicola, Aerococcus sanguinicola corrig. Lawson et al. 2001 emend. Tohno et al. 2014, Aerococcus sp. CCUG 43001, CCUG 43001, CIP 106533, DSM 15633, JCM 11549
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