STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hflXGTPase HflX; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)    
Predicted Functional Partners:
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
 
 0.970
AMB93831.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.962
rplS
This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.961
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.960
rplM
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.960
rplD
50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.960
AMB93411.1
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.959
rplQ
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.959
rplT
50S ribosomal protein L20; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.959
rpmG
50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.959
Your Current Organism:
Aerococcus sanguinicola
NCBI taxonomy Id: 119206
Other names: A. sanguinicola, Aerococcus sanguicola, Aerococcus sanguinicola corrig. Lawson et al. 2001 emend. Tohno et al. 2014, Aerococcus sp. CCUG 43001, CCUG 43001, CIP 106533, DSM 15633, JCM 11549
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