STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDB09540.1KEGG: cobalamin synthesis protein P47K; PFAM: cobalamin synthesis CobW domain protein; SMART: cobalamin synthesis CobW domain protein. (233 aa)    
Predicted Functional Partners:
KDB07736.1
TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K, cobalamin synthesis CobW domain protein; KEGG: cobalamin synthesis protein/P47K family protein; SMART: cobalamin synthesis CobW domain protein.
 
     0.771
KDB09853.1
KEGG: metal chaperone; PFAM: cobalamin synthesis protein P47K, cobalamin synthesis CobW domain protein; SMART: cobalamin synthesis CobW domain protein.
  
     0.750
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.690
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.672
KDB08499.1
PFAM: ABC-type metal ion transporter, periplasmic subunit; KEGG: periplasmic solute binding protein.
  
  
 0.619
folE2
GTP cyclohydrolase FolE2; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.601
dksA
Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.580
rpmB
TIGRFAM: ribosomal protein L28; HAMAP : 50S ribosomal protein L28; KEGG: 50S ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.548
KDB09537.1
PFAM: NADPH-dependent FMN reductase; KEGG: putative flavodoxin protein.
 
     0.532
KDB09296.1
Transcriptional regulator, TraR/DksA family; KEGG: putative regulatory protein.
  
  
 0.525
Your Current Organism:
Burkholderia sp. lig30
NCBI taxonomy Id: 1192124
Other names: B. sp. lig30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.