STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JBW_02636KEGG: L-fucose isomerase family protein; PFAM: L-fucose isomerase-like protein. (493 aa)    
Predicted Functional Partners:
JBW_02638
L-ribulose-5-phosphate 4-epimerase; KEGG: protein AraD; SMART: class II aldolase/adducin family protein; PFAM: class II aldolase/adducin family protein.
 
  
 0.685
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
 0.663
araB
HAMAP : Ribulokinase; PFAM: Carbohydrate kinase, FGGY; KEGG: L-ribulokinase; TIGRFAM: L-ribulokinase.
 
   
 0.600
xylB
KEGG: xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY.
 
  
 0.521
JBW_02966
D-lyxose ketol-isomerase; KEGG: sugar ABC transporter, auxiliary component.
  
     0.482
JBW_00544
Xylulokinase; PFAM: Carbohydrate kinase, FGGY; KEGG: xylulose kinase; Belongs to the FGGY kinase family.
 
  
 0.417
JBW_02635
PFAM: chemotaxis sensory transducer, 4HB MCP domain, histidine kinase HAMP region domain protein; KEGG: methyl-accepting chemotaxis protein; SMART: chemotaxis sensory transducer, histidine kinase HAMP region domain protein.
  
    0.416
JBW_03703
MoeA domain protein domain I and II; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
   
    0.408
Your Current Organism:
Pelosinus fermentans
NCBI taxonomy Id: 1192197
Other names: P. fermentans JBW45, Pelosinus fermentans JBW45, Pelosinus fermentans str. JBW45, Pelosinus fermentans strain JBW45
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