STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A200_00030COG0629 Single-stranded DNA-binding protein. (186 aa)    
Predicted Functional Partners:
dnaE
COG0587 DNA polymerase III, alpha subunit.
   
 0.831
A200_02126
Primosome assembly protein PriA; COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase.
    
 
 0.727
A200_03092
DNA polymerase III subunit delta; COG0470 ATPase involved in DNA replication.
    
 
 0.687
A200_03162
COG2812 DNA polymerase III, gamma/tau subunits.
    
 
 0.687
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
  
 0.641
A200_06477
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
 
 0.629
A200_01691
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.579
A200_07634
Hypothetical protein; COG0433 Predicted ATPase.
  
 
 0.579
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
   
 
 0.573
rpsB
COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
   
   0.562
Your Current Organism:
Parascardovia denticolens
NCBI taxonomy Id: 1193128
Other names: P. denticolens IPLA 20019, Parascardovia denticolens IPLA 20019, Parascardovia denticolens str. IPLA 20019, Parascardovia denticolens strain IPLA 20019
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.