STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A200_00180D-ribose-binding periplasmic protein; COG1879 ABC-type sugar transport system, periplasmic component. (313 aa)    
Predicted Functional Partners:
A200_00185
Branched-chain amino acid ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 0.999
A200_00190
COG1129 ABC-type sugar transport system, ATPase component.
 0.996
A200_00175
D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
 
 0.995
A200_05417
Sensor protein; COG0642 Signal transduction histidine kinase.
 
  
 0.905
A200_05217
COG0642 Signal transduction histidine kinase.
    
 0.863
A200_07203
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
    
 0.863
A200_04455
Hypothetical protein.
  
 
 0.801
rbsK
Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.738
A200_02905
Sugars ABC transporter ATP-binding protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
   
 
 0.737
A200_01456
Sugar binding protein of ABC transporter system; COG1653 ABC-type sugar transport system, periplasmic component.
  
 
 0.723
Your Current Organism:
Parascardovia denticolens
NCBI taxonomy Id: 1193128
Other names: P. denticolens IPLA 20019, Parascardovia denticolens IPLA 20019, Parascardovia denticolens str. IPLA 20019, Parascardovia denticolens strain IPLA 20019
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.