STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A200_06764COG0153 Galactokinase; Belongs to the GHMP kinase family. GalK subfamily. (423 aa)    
Predicted Functional Partners:
A200_06759
COG1085 Galactose-1-phosphate uridylyltransferase.
 0.999
A200_03949
Hypothetical protein; COG2017 Galactose mutarotase and related enzymes.
  
 0.995
A200_06302
COG1087 UDP-glucose 4-epimerase.
 
 0.991
A200_04867
NAD-dependent oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
  
 0.858
A200_03919
PTS system glucose-specific transporter subunit IIABC PtsG; COG1264 Phosphotransferase system IIB components.
   
  
 0.773
A200_04580
UTP--glucose-1-phosphate uridylyltransferase; COG4284 UDP-glucose pyrophosphorylase.
  
 
 0.694
A200_00645
COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
    
 0.692
A200_01446
COG3345 Alpha-galactosidase.
 
 
 0.689
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
      
 0.679
A200_00550
COG3250 Beta-galactosidase/beta-glucuronidase.
 
  
 0.616
Your Current Organism:
Parascardovia denticolens
NCBI taxonomy Id: 1193128
Other names: P. denticolens IPLA 20019, Parascardovia denticolens IPLA 20019, Parascardovia denticolens str. IPLA 20019, Parascardovia denticolens strain IPLA 20019
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.