STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobNAerobic cobaltochelatase subunit CobN. (1216 aa)    
Predicted Functional Partners:
CCH69132.1
Cob(I)yrinic acid a,c-diamide adenosyltransferase.
  
 0.995
cobIJ
Cobalamin biosynthesis protein CobIJ (Includes: Precorrin-2 C(20)-methyltransferase; Precorrin-3B C17-methyltransferase).
 
  
 0.957
cobH
Precorrin-8X methylmutase.
 
  
 0.925
CCH68472.1
CobG.
 
   
 0.897
CCH68705.1
Cob(I)yrinic acid a,c-diamide adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
    
 0.897
CCH69784.1
Exported hypothetical protein; No homology to any previously reported sequences.
 
 
 0.892
cobM
Precorrin-4 C(11)-methyltransferase; Belongs to the precorrin methyltransferase family.
 
   
 0.891
CCH69627.1
Hypothetical protein; No homology to any previously reported sequences.
 
 
 0.871
cobK
Precorrin-6A reductase.
 
   
 0.871
CCH70682.1
Precorrin-6A reductase (modular protein).
 
   
 0.865
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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