STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH68503.1Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (415 aa)    
Predicted Functional Partners:
CCH68502.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.691
mpb
Cell surface lipoprotein MPB83.
 
     0.524
CCH68504.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.504
metH
homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.425
CCH68507.1
Putative membrane-bound oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.423
sigK
RNA polymerase sigma factor sigK; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.408
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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