STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH68594.1ErfK/YbiS/YcfS/YnhG family protein. (289 aa)    
Predicted Functional Partners:
CCH71335.1
DNA primase.
  
     0.561
CCH69125.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.511
CCH68595.1
Citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family.
       0.489
CCH68596.1
Putative Citrate lyase, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the HpcH/HpaI aldolase family.
       0.489
CCH71530.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.444
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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