STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH68960.1Conserved hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands. (169 aa)    
Predicted Functional Partners:
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.831
CCH68959.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.625
CCH70369.1
Conserved hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
  
 
   0.471
CCH70843.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.443
CCH68962.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the GcvT family.
 
    0.442
BN10_50008
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.424
CCH69805.1
Putative membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.418
CCH70953.1
Putative lipopolysaccharide N-acetyl-glycoaminyltransferase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.418
CCH68555.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.411
qcrA
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
  
    0.405
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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