STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH69206.1Histidine kinase. (379 aa)    
Predicted Functional Partners:
CCH69205.1
Two component transcriptional regulator, LuxR family.
  0.975
CCH69207.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.877
CCH71326.1
Membrane hypothetical protein; No homology to any previously reported sequences.
  
  
  0.802
degU
Transcriptional regulatory protein degU.
 
  0.795
yxjL
Uncharacterized transcriptional regulatory protein yxjL.
 
  0.792
CCH71325.1
Response regulator receiver protein.
  
  0.775
CCH69218.1
LuxR family two component transcriptional regulator.
 
  0.773
CCH69423.1
Two component transcriptional regulator, LuxR family.
 
  0.761
yxjL-2
Uncharacterized transcriptional regulatory protein yxjL.
 
  0.760
nreC
Oxygen regulatory protein nreC.
 
  0.753
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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