STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH69400.1Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. (119 aa)    
Predicted Functional Partners:
CCH69401.1
Exported hypothetical protein; No homology to any previously reported sequences.
 
    0.919
CCH69398.1
Hypothetical protein; No homology to any previously reported sequences.
       0.773
CCH69399.1
Exported hypothetical protein; No homology to any previously reported sequences.
       0.773
rbpA
Electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.464
CCH71397.1
Putative membrane protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.447
CCH68549.1
Putative Conserved membrane protein, permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.420
cphA
Cyanophycin synthetase; Belongs to the MurCDEF family.
    
 0.406
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.