STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH70015.1Putative transmembrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (448 aa)    
Predicted Functional Partners:
CCH70014.1
Putative secreted penicillin-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.769
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.739
CCH70412.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.701
CCH68920.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.668
CCH69720.1
Wag31.
  
     0.653
ssb
Single-stranded DNA-binding protein 2.
       0.608
CCH69806.1
ErfK/YbiS/YcfS/YnhG.
  
     0.589
CCH68875.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.566
BN10_70004
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.548
CCH70013.1
Putative transcriptional regulator PadR-like family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.547
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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