Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BN10_40002 | CCH69201.1 | BN10_40002 | BN10_140013 | Chorismate mutase. | GCN5-related N-acetyltransferase (modular protein). | 0.464 |
BN10_40002 | CCH70089.1 | BN10_40002 | BN10_500025 | Chorismate mutase. | Putative shikimate 5-dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the shikimate dehydrogenase family. | 0.685 |
BN10_40002 | CCH70523.1 | BN10_40002 | BN10_590040 | Chorismate mutase. | Prephenate dehydrogenase. | 0.966 |
BN10_40002 | aroA | BN10_40002 | BN10_1730021 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.913 |
BN10_40002 | aroB | BN10_40002 | BN10_160004 | Chorismate mutase. | 3-dehydroquinate synthase. | 0.625 |
BN10_40002 | aroC | BN10_40002 | BN10_500027 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.976 |
BN10_40002 | aroH | BN10_40002 | BN10_360037 | Chorismate mutase. | Phospho-2-dehydro-3-deoxyheptonate aldolase; Belongs to the class-II DAHP synthase family. | 0.997 |
BN10_40002 | aroK | BN10_40002 | BN10_500028 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.737 |
BN10_40002 | aroQ | BN10_40002 | BN10_460058 | Chorismate mutase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.536 |
BN10_40002 | pheA | BN10_40002 | BN10_710005 | Chorismate mutase. | Prephenate dehydratase. | 0.897 |
CCH69201.1 | BN10_40002 | BN10_140013 | BN10_40002 | GCN5-related N-acetyltransferase (modular protein). | Chorismate mutase. | 0.464 |
CCH69201.1 | aroB | BN10_140013 | BN10_160004 | GCN5-related N-acetyltransferase (modular protein). | 3-dehydroquinate synthase. | 0.560 |
CCH69201.1 | aroK | BN10_140013 | BN10_500028 | GCN5-related N-acetyltransferase (modular protein). | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.653 |
CCH69201.1 | aroQ | BN10_140013 | BN10_460058 | GCN5-related N-acetyltransferase (modular protein). | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.572 |
CCH70089.1 | BN10_40002 | BN10_500025 | BN10_40002 | Putative shikimate 5-dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the shikimate dehydrogenase family. | Chorismate mutase. | 0.685 |
CCH70089.1 | aroA | BN10_500025 | BN10_1730021 | Putative shikimate 5-dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the shikimate dehydrogenase family. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.997 |
CCH70089.1 | aroB | BN10_500025 | BN10_160004 | Putative shikimate 5-dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the shikimate dehydrogenase family. | 3-dehydroquinate synthase. | 0.998 |
CCH70089.1 | aroC | BN10_500025 | BN10_500027 | Putative shikimate 5-dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the shikimate dehydrogenase family. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.977 |
CCH70089.1 | aroH | BN10_500025 | BN10_360037 | Putative shikimate 5-dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the shikimate dehydrogenase family. | Phospho-2-dehydro-3-deoxyheptonate aldolase; Belongs to the class-II DAHP synthase family. | 0.671 |
CCH70089.1 | aroK | BN10_500025 | BN10_500028 | Putative shikimate 5-dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the shikimate dehydrogenase family. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.997 |
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