STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH70159.1ABC-2 type transporter. (291 aa)    
Predicted Functional Partners:
CCH70158.1
ABC transporter related protein (fragment).
 
 0.999
CCH70991.1
Hypothetical protein; No homology to any previously reported sequences.
 
  
 0.937
CCH70965.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.908
wbbL
dTDP-Rha:alpha-D-GlcNAc-pyrophosphate polyprenol,alpha-3-L-rhamnosyltransferase.
 
  
 0.817
CCH70161.1
Glycosyl transferase family 2 (fragment).
 
  
 0.794
CCH70160.1
Glycosyl transferase group 1.
 
    0.767
CCH70429.1
Hypothetical protein; No homology to any previously reported sequences.
 
  
 0.747
CCH70162.1
Glycosyl transferase group 1.
 
    0.706
CCH70156.1
Glycosyl transferase.
 
  
 0.690
CCH70157.1
Glycosyl transferase group 1.
  
    0.608
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.