STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdRPutative Type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1036 aa)    
Predicted Functional Partners:
hsdM-2
Type I restriction enzyme EcoprrI M protein.
 
 0.993
CCH71285.1
N-6 DNA methylase (fragment).
 
 
 0.977
hsdS
Type I restriction modification enzyme protein S.
 
  
 0.943
CCH69282.1
Methyltransferase small.
 
 
 0.908
hsdM
Type I site-specific deoxyribonuclease.
  
 
 0.907
CCH71287.1
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.906
CCH70202.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.607
CCH70205.1
Hypothetical protein; No homology to any previously reported sequences.
       0.485
CCH69213.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.437
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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