STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yclPPutative iron-siderophore ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (261 aa)    
Predicted Functional Partners:
yclO
Putative iron-siderophore ABC transporter (permease); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.997
yclN
Putative iron-siderophore ABC transporter (permease); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.994
CCH70273.1
Putative Uncharacterized ABC transporter solute-binding protein yclQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.991
appD
Oligopeptide ABC transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
     
0.899
oppD
Oligopeptide ABC transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
     
0.899
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
      0.669
CCH70272.1
Siderophore-interacting protein.
 
    0.647
lolD-2
Lipoprotein-releasing system ATP-binding protein LolD.
 
   
0.466
CCH70277.1
Hypothetical protein; No homology to any previously reported sequences.
       0.442
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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