STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH70374.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (283 aa)    
Predicted Functional Partners:
CCH70373.1
Hydrolase.
 
     0.699
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.663
CCH71223.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0336 family.
  
     0.622
metH
homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.535
CCH68612.1
Putative cytochrome c oxidase subunit XV assembly protein (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.468
qcrC
Menaquinol-cytochrome c reductase cytochrome c subunit.
  
     0.447
CCH70488.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.447
CCH69689.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
  
0.444
CCH69805.1
Putative membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.437
CCH68607.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.423
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.