STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH70410.1Putative chromosome condensation protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the pirin family. (332 aa)    
Predicted Functional Partners:
CCH70411.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.657
CCH70412.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.531
CCH70413.1
Putative integral membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.531
CCH70407.1
Major facilitator superfamily MFS_1.
       0.478
iscSA
Cysteine desulfurase involved in tRNA thiolation; Function of strongly homologous gene; enzyme.
       0.478
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.478
CCH70439.1
4,5-DOPA dioxygenase extradiol-like protein.
 
  
 0.439
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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