STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH70986.1Zn-ribbon protein-like protein. (245 aa)    
Predicted Functional Partners:
CCH69816.1
Putative two-component system response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.604
CCH70985.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.593
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.567
CCH70983.1
Multimeric flavodoxin WrbA.
       0.566
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
       0.566
CCH70987.1
Hypothetical protein; No homology to any previously reported sequences.
       0.566
lsr
Protein lsr2.
  
   
 0.529
CCH71135.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.519
CCH70988.1
Glutaconyl-CoA decarboxylase subunit gamma (fragment).
       0.500
CCH69900.1
NADH-quinone oxidoreductase subunit G (fragment); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.487
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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