STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH71068.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (352 aa)    
Predicted Functional Partners:
CCH70722.1
Putative Hydrolase, isochorismatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.656
CCH70121.1
Acetyltransferase.
  
 
  0.577
CCH69426.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.555
CCH71067.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.524
CCH70721.1
Putative Transport-protein, permease for cytosine/purines; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the purine-cytosine permease (2.A.39) family.
  
     0.456
CCH69728.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.445
CCH71441.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.424
CCH68585.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.413
CCH70332.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.409
whiB-5
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.404
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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