STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH71312.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (116 aa)    
Predicted Functional Partners:
CCH70347.1
Putative dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
  0.955
CCH70340.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
  0.936
CCH70341.1
D-lysine 5,6-aminomutase beta subunit.
 
     0.784
CCH70342.1
Lysine 5,6-aminomutase alpha subunit.
 
     0.784
CCH71311.1
Major facilitator superfamily permease.
       0.631
CCH70348.1
L-lysine 2,3-aminomutase.
 
     0.590
scoB
Fragment of succinyl CoA:3-oxoacid CoA-transferase (subunit A) (part 2); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
  0.536
CCH71310.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.527
CCH68776.1
Putative 3-hydroxyacyl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase (hbd, mmgB, BHBD)); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.515
CCH71315.1
Hypothetical protein; No homology to any previously reported sequences.
       0.500
Your Current Organism:
Tetrasphaera elongata
NCBI taxonomy Id: 1193181
Other names: T. elongata Lp2, Tetrasphaera elongata DSM 14184, Tetrasphaera elongata Lp2, Tetrasphaera elongata str. Lp2, Tetrasphaera elongata strain Lp2, actinomycete Lp2
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