STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH75313.1Transcriptional regulator. (269 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.990
rpoA
RNA polymerase (alpha subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.975
rpoC
RNA polymerase (beta' subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.975
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.975
hrdB
RNA polymerase principal sigma factor hrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.975
CCH72790.1
Putative DNA polymerase III, delta' subunit (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  0.820
accD
Putative acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  0.813
CCH75388.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
    
  0.701
fumA
Fumarate hydratase (fumarase A), aerobic Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.683
dnaJ
Chaperone protein DnaJ 1.
  
   0.632
Your Current Organism:
Tetrasphaera australiensis
NCBI taxonomy Id: 1193182
Other names: T. australiensis Ben110, Tetrasphaera australiensis Ben110, Tetrasphaera australiensis str. Ben110, Tetrasphaera australiensis strain Ben110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.