STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCI52549.1Putative Aminoglycoside phosphotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (327 aa)    
Predicted Functional Partners:
CCI54428.1
Carbamoyl-phosphate synthase L chain ATP-binding protein.
   
 
  0.625
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.503
ssb
Single-stranded DNA-binding protein 2.
       0.485
fadJ
Fatty acid oxidation complex subunit alpha; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.472
CCI54429.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.460
CCI53901.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
   0.440
CCI51518.1
Exported hypothetical protein; No homology to any previously reported sequences.
  
     0.409
Your Current Organism:
Tetrasphaera jenkinsii
NCBI taxonomy Id: 1193518
Other names: T. jenkinsii Ben 74, Tetrasphaera jenkinsii Ben 74, Tetrasphaera jenkinsii str. Ben 74, Tetrasphaera jenkinsii strain Ben 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.