STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCI53569.1Transcriptional regulator, PadR family protein. (184 aa)    
Predicted Functional Partners:
CCI53568.1
NADH:flavin oxidoreductase/nadh oxidase.
 
     0.858
aofH
Putative flavin-containing monoamine oxidase aofH; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.771
fadH
2,4-dienoyl-CoA reductase, NADH and FMN-linked; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.616
CCI53570.1
Peptidase U34, dipeptidase (modular protein).
       0.590
CCI53566.1
Hypothetical protein; No homology to any previously reported sequences.
       0.526
CCI53565.1
Transcriptional regulator, MarR family.
  
    0.519
CCI53908.1
Hypothetical protein; No homology to any previously reported sequences.
  
     0.498
CCI53694.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.445
CCI51391.1
Helix-turn-helix type 11 domain protein.
  
     0.417
CCI53909.1
Hypothetical protein; No homology to any previously reported sequences.
  
     0.414
Your Current Organism:
Tetrasphaera jenkinsii
NCBI taxonomy Id: 1193518
Other names: T. jenkinsii Ben 74, Tetrasphaera jenkinsii Ben 74, Tetrasphaera jenkinsii str. Ben 74, Tetrasphaera jenkinsii strain Ben 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.