STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobCAlpha-ribazole phosphatase. (383 aa)    
Predicted Functional Partners:
SCI85292.1
Cobalamin synthase.
 
 
 0.938
pgk
Phosphoglycerate kinase.
    
 0.902
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase.
 
 
 0.899
pgi
Glucose-6-phosphate isomerase.
  
 
 0.892
glyA
Pyridoxal-phosphate-dependent serine hydroxymethyltransferase.
    
 0.883
gpmI
2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase.
     
 0.883
fba
Fructose-bisphosphate aldolase.
  
 
 0.880
calB
Coniferyl aldehyde dehydrogenase.
  
 
 0.877
serC
Phosphoserine aminotransferase.
    
 0.875
tdcB_1
L-threonine dehydratase catabolic TdcB.
 
  
  0.860
Your Current Organism:
uncultured Flavonifractor sp.
NCBI taxonomy Id: 1193534
Other names: u. Flavonifractor sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.