STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH77058.1D-aspartate oxidase. (316 aa)    
Predicted Functional Partners:
gcvT
Aminomethyltransferase (glycine cleavage system T protein); The glycine cleavage system catalyzes the degradation of glycine.
   
 0.852
CCH80174.1
Putative aminomethyltransferase protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the GcvT family.
   
 0.852
stcD
Putative N-methylproline demethylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.832
gltA-2
Glutamate synthase (large subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.800
gcvP
Glycine dehydrogenase (decarboxylating) (glycine cleavage system P protein); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.787
CCH77584.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the hyi family.
  
  
  0.779
serA-2
D-3-phosphoglycerate dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.773
mas
Malate synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the malate synthase family.
   
 
  0.768
CCH76495.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
  0.761
serA
D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.757
Your Current Organism:
Tetrasphaera japonica
NCBI taxonomy Id: 1194083
Other names: T. japonica T1-X7, Tetrasphaera japonica T1-X7, Tetrasphaera japonica str. T1-X7, Tetrasphaera japonica strain T1-X7
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.