STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE30537.16-bladed beta-propeller protein. (398 aa)    
Predicted Functional Partners:
SHE48364.1
Quinoprotein glucose dehydrogenase.
  
  0.715
SHF19571.1
Quinoprotein glucose dehydrogenase.
  
  0.715
SHF79983.1
Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.
  
  0.701
SHE35760.1
Amino acid adenylation domain-containing protein.
  
    0.621
SHE57012.1
Glutamate synthase (ferredoxin).
    
  0.621
SHG20065.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.617
SHF50338.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
  0.596
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.580
SHE45691.1
Putative membrane-bound dehydrogenase domain-containing protein.
   
  0.574
SHE48865.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
   
  0.574
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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