STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE36480.1Phage shock protein C (PspC) family protein. (226 aa)    
Predicted Functional Partners:
SHE79519.1
Phage shock protein A (PspA) family protein.
  
 
 0.987
SHE59497.1
Putative membrane protein.
  
    0.821
SHF80886.1
PAS domain S-box-containing protein.
    
 
 0.656
SHE80272.1
PAS domain S-box-containing protein.
  
 
 0.620
SHF16643.1
PAS domain S-box-containing protein.
  
 
 0.620
SHF47224.1
PAS domain S-box-containing protein.
  
 
 0.620
SHG06105.1
PAS domain S-box-containing protein.
  
 
 0.620
SHF66557.1
Signal transduction histidine kinase.
   
   0.522
SHG33686.1
PAS domain S-box-containing protein.
   
   0.510
SHF47559.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
   0.478
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.