STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE43435.1Chain length determinant protein. (346 aa)    
Predicted Functional Partners:
SHE65787.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
 0.985
SHF31932.1
Glycosyltransferase, GT2 family.
  
 
 0.778
SHE40388.1
Capsule assembly protein Wzi.
  
     0.750
SHF39389.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
    0.661
SHF27419.1
Mannose-1-phosphate guanylyltransferase.
  
 
 0.604
SHG39931.1
Protein of unknown function.
  
     0.599
SHE43228.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
 
 0.582
SHE35237.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.552
SHG34174.1
UDP-N-acetylglucosamine 4,6-dehydratase (inverting).
  
 
 0.552
SHE41655.1
Protein of unknown function (Gcw_chp).
  
     0.540
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.