STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE63983.1Alkaline phosphatase D. (547 aa)    
Predicted Functional Partners:
SHF93181.1
Hypothetical protein.
 
  
 0.690
SHF70677.1
Alkaline phosphatase D.
  
     0.663
SHF23563.1
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
 
 0.620
SHE63942.1
F5/8 type C domain-containing protein.
       0.608
SHE63897.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.564
SHE64072.1
Uncharacterized sulfatase.
    
  0.549
SHE64022.1
Hypothetical protein.
       0.531
folE
GTP cyclohydrolase I.
    
 0.508
SHE81036.1
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.502
SHF22400.1
NADPH:quinone reductase.
 
      0.502
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.