STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE55679.1Hypothetical protein. (309 aa)    
Predicted Functional Partners:
SHF86152.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
    0.768
SHF98204.1
Hypothetical protein.
  
    0.655
SHF10677.1
Putative NADH-flavin reductase.
   
    0.614
SHF32023.1
Arginine deiminase.
   
    0.614
SHG73014.1
Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase.
   
    0.604
SHE55640.1
DoxX protein.
       0.501
SHE60119.1
Iron (metal) dependent repressor, DtxR family.
   
    0.483
SHF71032.1
Zinc transporter, ZIP family.
  
    0.421
SHF72159.1
Zinc transporter ZupT.
  
    0.421
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
    0.404
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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