STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE58487.1Hypothetical protein. (428 aa)    
Predicted Functional Partners:
SHF70285.1
FAD dependent oxidoreductase.
  
     0.637
SHF43406.1
Repeat domain-containing protein.
  
     0.622
SHE40573.1
Acetyl xylan esterase (AXE1).
  
  
  0.617
SHE46177.1
Methane oxygenase PmoA.
  
     0.615
SHF50338.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
 
  0.614
SHG41158.1
Cephalosporin-C deacetylase.
  
  
  0.611
SHF70325.1
FAD dependent oxidoreductase.
  
     0.600
SHG16058.1
Inosine-uridine nucleoside N-ribohydrolase.
  
  
  0.599
SHE74815.1
Hypothetical protein.
  
     0.590
SHF85703.1
FAD dependent oxidoreductase.
  
     0.584
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.