STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE80638.1Hypothetical protein. (338 aa)    
Predicted Functional Partners:
SHE36281.1
Hypothetical protein.
  
     0.739
SHE48240.1
Protein of unknown function.
  
     0.678
SHF90491.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
     0.520
SHF92223.1
Sugar lactone lactonase YvrE.
  
     0.520
SHF47911.1
D-amino-acid:oxygen oxidoreductase.
  
     0.509
SHE31279.1
6-bladed beta-propeller protein.
  
     0.503
SHE80695.1
Repeat domain-containing protein.
       0.494
SHG58500.1
N-sulfoglucosamine sulfohydrolase.
  
     0.429
SHF16209.1
Lanthionine synthetase C-like protein.
  
     0.425
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
     0.423
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.