STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE92834.1Triacylglycerol lipase. (286 aa)    
Predicted Functional Partners:
rplQ
LSU ribosomal protein L17P.
  
 
   0.815
rplC
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
   0.812
rpmA
LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.
  
   0.806
SHE81795.1
SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
    
   0.778
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.778
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.778
rplU
Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.778
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.778
rplL
LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.778
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
    
   0.778
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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