STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF10562.1Transcriptional regulator, AraC family. (282 aa)    
Predicted Functional Partners:
SHF10598.1
Transcriptional regulator, AraC family.
 
   0.889
SHF40987.1
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.795
SHG69371.1
Transcriptional regulator, AraC family.
 
   0.746
SHG44490.1
Helix-turn-helix domain-containing protein.
  
   0.714
SHE91021.1
Helix-turn-helix domain-containing protein.
  
   0.711
SHF43816.1
AraC-type DNA-binding protein.
  
   0.698
SHE80208.1
Chorismate mutase /prephenate dehydratase.
  
 
 0.692
SHF81059.1
AraC-type DNA-binding protein.
 
   0.668
SHF81624.1
Transcriptional regulator, AraC family.
 
   0.636
SHE57012.1
Glutamate synthase (ferredoxin).
    
  0.622
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.