STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF30273.1TonB-linked outer membrane protein, SusC/RagA family. (1154 aa)    
Predicted Functional Partners:
SHF30305.1
SusD family protein.
 
     0.926
SHF30236.1
FecR family protein.
 
    0.858
SHF30404.1
Protein of unknown function.
 
     0.752
SHF30433.1
Protein of unknown function.
 
     0.741
SHG55933.1
TonB dependent receptor.
  
     0.680
SHG58557.1
Starch-binding associating with outer membrane.
  
     0.679
SHE64504.1
Starch-binding associating with outer membrane.
  
     0.648
SHF96270.1
Starch-binding associating with outer membrane.
  
     0.608
SHE48023.1
TonB dependent receptor.
  
 
  0.604
SHF31609.1
Starch-binding associating with outer membrane.
  
     0.575
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.