STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF48076.1Hydroxypyruvate isomerase. (309 aa)    
Predicted Functional Partners:
SHF48105.1
Predicted dehydrogenase.
 
    0.883
SHG40898.1
Predicted dehydrogenase.
  
    0.749
SHG43003.1
Predicted dehydrogenase.
  
    0.732
SHF84441.1
Gluconate 2-dehydrogenase subunit 3.
  
     0.721
SHF17949.1
Protein of unknown function.
  
     0.640
SHG62653.1
Protein of unknown function.
  
     0.638
SHG46929.1
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain.
  
     0.602
SHE82204.1
Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
 0.598
SHF84478.1
Choline dehydrogenase.
 
     0.587
SHG33078.1
Predicted dehydrogenase.
  
    0.583
Your Current Organism:
Aliifodinibius roseus
NCBI taxonomy Id: 1194090
Other names: A. roseus, ACCC 10715, Aliifodinibius roseus Wang et al. 2013, Bacteroidetes bacterium YIM D15, DSM 21986, KCTC 23442, YIM D15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.